Packaging/Python: Difference between revisions

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m distutils deprecated in py 3.12 notice, fix link
 
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Packaging of python packages is generally done via pypi2nix
See [[Language-specific package helpers]] for a list of tools to package python packages.
 
== Prepare Packaging ==
== Prepare Packaging ==
When you want to package a new software from a local checkout with the inputs coming from nixpkgs (and not virtualenv+pip) you can use the following <code>shell.nix</code> <ref>[https://nixos.org/nixpkgs/manual/#develop-local-package nixpkgs manual]</ref>:
When you want to package a new software from a local checkout with the inputs coming from nixpkgs (and not virtualenv+pip) you can use the following <code>shell.nix</code> <ref>[https://nixos.org/nixpkgs/manual/#develop-local-package nixpkgs manual]</ref>:
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</syntaxHighlight>
</syntaxHighlight>
You can now run <code>nix-shell</code> and it will drop you in a shell similar to the <code>python setup.py develop</code> mode which uses the local code in <tt>./path/to/source</tt> as input. <code>propagatedBuildInputs</code> will contain the packages you  need in your project.
You can now run <code>nix-shell</code> and it will drop you in a shell similar to the <code>python setup.py develop</code> mode which uses the local code in <tt>./path/to/source</tt> as input. <code>propagatedBuildInputs</code> will contain the packages you  need in your project.
After you've finished developing you can replace the relative path with <code>fetchFromGitHub { ... }</code> or <code>fetchPypi { ... }</code>.
After you've finished developing you can replace the relative path with <code>fetchFromGitHub { ... }</code> or <code>[https://github.com/NixOS/nixpkgs/blob/master/pkgs/build-support/fetchpypi/default.nix fetchPypi] { ... }</code>.


== Pip and Virtualenv enabled nix-shell ==
== Pip and Virtualenv enabled nix-shell ==
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For a local working python environment you can use the following <code>shell.nix</code><ref>https://groups.google.com/forum/#!topic/nix-devel/3qPfwCAV3GE</ref>.
For a local working python environment you can use the following <code>shell.nix</code><ref>https://groups.google.com/forum/#!topic/nix-devel/3qPfwCAV3GE</ref>.
<syntaxHighlight lang=nix>
<syntaxHighlight lang=nix>
with import <nixpkgs> {};
{ pkgs ? import <nixpkgs> { } }:


stdenv.mkDerivation {
let
   name = "pip-env";
   pythonEnv = pkgs.python3.withPackages(ps: [ ]);
  buildInputs = [
    # System requirements.
    readline


    # Python requirements (enough to get a virtualenv going).
in
    python27Full
pkgs.mkShell {
     python27Packages.virtualenv
  packages = [
    python27Packages.pip
     pythonEnv
   ];
   ];
  src = null;
  shellHook = ''
    # Allow the use of wheels.
    SOURCE_DATE_EPOCH=$(date +%s)
    # Augment the dynamic linker path
    export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:${R}/lib/R/lib:${readline}/lib
  '';
}
}
</syntaxHighlight>
</syntaxHighlight>
Line 49: Line 39:


== Caveats ==
== Caveats ==
=== ModuleNotFoundError: No module named 'pkg_resources' ===
=== ModuleNotFoundError: No module named 'pkg_resources' ===
If you see the pkg_resources issues at runetime:
 
If you see this runtime error
 
<pre>
<pre>
  File "/nix/store/czdpbzpv9csghfs0clw10i758mpxixbc-python3.7-acronym-1.6.0/lib/python3.7/site-packages/acronym/acronym.py", line 17, in <module>
    from pkg_resources import resource_filename
ModuleNotFoundError: No module named 'pkg_resources'
ModuleNotFoundError: No module named 'pkg_resources'
</pre>
</pre>
add
 
add <code>setuptools</code> to your derivation
 
<syntaxHighlight lang=nix>
<syntaxHighlight lang=nix>
   ...
buildPythonPackage {
   # ...
   propagatedBuildInputs = [
   propagatedBuildInputs = [
     ...
     # ...
     setuptools
     setuptools
   ];
   ];
}
}
</syntaxHighlight>
</syntaxHighlight>
to your derivation.
 
Please report such issues at https://github.com/NixOS/nixpkgs/issues
 
=== HTTP 404 with fetchPypi ===
 
example error:
 
<blockquote>
curl: (22) The requested URL returned error: 404<br>
error: cannot download stt-1.2.0.tar.gz from any mirror
</blockquote>
 
when we look at https://pypi.org/project/stt/#files we see only <code>*.whl</code> files:
 
* <code>stt-1.2.0-cp310-cp310-win_amd64.whl</code>
* <code>stt-1.2.0-cp310-cp310-manylinux_2_24_x86_64.whl</code>
* <code>stt-1.2.0-cp310-cp310-macosx_10_10_universal2.whl</code>
* ...
 
this means, this is a binary release, so we have two options:
 
# build from source
# install binary release
 
==== build from source ====
 
replace this
 
<syntaxHighlight lang=nix>
    buildPythonPackage {
      pname = "TODO";
      version = "TODO";
      src = fetchPypi {
        inherit pname version;
        sha256 = ""; # TODO
      };
</syntaxHighlight>
 
with this
 
<syntaxHighlight lang=nix>
    buildPythonPackage {
      pname = "TODO";
      version = "TODO";
      src = fetchFromGitHub {
        owner = "TODO";
        repo = "TODO";
        rev = "v${version}";
        sha256 = ""; # TODO
      };
</syntaxHighlight>
 
 
==== install binary release ====
 
replace this
 
<syntaxHighlight lang=nix>
    buildPythonPackage {
      pname = "TODO";
      version = "TODO";
      src = fetchPypi {
        inherit pname version;
        sha256 = ""; # TODO
      };
</syntaxHighlight>
 
with this
 
<syntaxHighlight lang=nix>
    buildPythonPackage {
      pname = "TODO";
      version = "TODO";
      format = "wheel";
      src = fetchPypi rec {
        inherit pname version format;
        sha256 = ""; # TODO
        dist = python;
        python = "py3";
        #abi = "none";
        #platform = "any";
      };
</syntaxHighlight>
 
... or use <code>fetchurl</code> to download the <code>*.whl</code> file directly.<br>
 
reference: [https://github.com/NixOS/nixpkgs/blob/master/pkgs/build-support/fetchpypi/default.nix fetchPypi implementation]
 
== Fix Missing <code>setup.py</code> ==
 
The <code>setup.py</code> file is required for <code>buildPythonPackage</code>,
but it's missing in some packages.
If you get the following error, you need to one of the workarounds below.
 
<pre>
FileNotFoundError: [Errno 2] No such file or directory: 'setup.py'
</pre>
 
If the package has a <code>pyproject.toml</code> file, set
 
<syntaxHighlight lang=nix>
buildPythonPackage {
  format = "pyproject";
}
</syntaxHighlight>
 
If both <code>setup.py</code> and <code>pyproject.toml</code> are missing,
you have to add one of these files.
 
'''Note:''' sometimes you will be able to find <code>pyproject.toml</code> in the source for a package despite it not being present in a <code>.whl</code> file. You can inspect the contents of a <code>.whl</code> file by downloading it from PyPi and then extracting it with <code>nix-shell -p python311Packages.wheel --command wheel unpack path/to/package.whl</code>.
 
For example, you can create the <code>setup.py</code> in the <code>preBuild</code> phase.
 
<syntaxHighlight lang=nix>
buildPythonPackage {
  preBuild = ''
    cat > setup.py << EOF
from setuptools import setup
 
with open('requirements.txt') as f:
    install_requires = f.read().splitlines()
 
setup(
  name='someprogram',
  #packages=['someprogram'],
  version='0.1.0',
  #author='...',
  #description='...',
  install_requires=install_requires,
  scripts=[
    'someprogram.py',
  ],
  entry_points={
    # example: file some_module.py -> function main
    #'console_scripts': ['someprogram=some_module:main']
  },
)
    EOF
  '';
}
</syntaxHighlight>
 
More info about the <code>setup.py</code> can be found [https://docs.python.org/3.11/distutils/setupscript.html here]. (<b>note:</b> from python 3.12 onwards, distutils is deprecated see https://docs.python.org/3.11/distutils/index.html)
 
<code>scripts</code> is useful for self-contained python scripts with no local imports.
 
If a python script has local imports,
for example <code>from .some_module import some_function</code>,
either include all files in the <code>scripts</code> array,
or add only the entry function to <code>entry_points</code>.
 
In this example, <code>someprogram.py</code> would be installed as <code>$out/bin/someprogram.py</code>.<br>
To rename the binary, for example to remove the <code>.py</code> file extension, you can use <code>postInstall</code>
 
<syntaxHighlight lang=nix>
buildPythonPackage {
  # ...
  postInstall = ''
    mv -v $out/bin/someprogram.py $out/bin/someprogram
  '';
}
</syntaxHighlight>
 
=== requirements.txt ===
 
<code>requirements.txt</code> in it's simplest form is a list of python packages
 
<pre>
numpy
Requests
Pillow
</pre>
 
<code>buildPythonPackage</code> will check these dependencies, but you still must declare the nix dependencies in <code>buildInputs</code>, <code>propagatedBuildInputs</code>, <code>checkInputs</code>, ...
 
== Automatic packaging ==
 
TODO https://github.com/nix-community/poetry2nix - 400 stars
 
TODO https://github.com/nix-community/pip2nix - 100 stars
 
TODO https://github.com/nix-community/pypi2nix - 200 stars - archived
 
== Testing via this command is deprecated ==
 
In most cases, tests will pass anyway and you can ignore the warning.
 
In some cases, tests will fail, for example:
 
<blockquote>
running test<br>
WARNING: Testing via this command is deprecated and will be removed in a future version. Users looking for a generic test entry point independent of test runner are encouraged to use tox.<br>
[ ... ]<br>
TypeError: some_function() missing 1 required positional argument: 'some_argument'
</blockquote>
 
quick fix: run tests with python's [https://docs.python.org/3/library/unittest.html unittest] module
 
<syntaxHighlight lang=nix>
  checkPhase = ''
    runHook preCheck
    ${python3.interpreter} -m unittest
    runHook postCheck
  '';
</syntaxHighlight>
 
== See also ==
 
* [https://github.com/NixOS/nixpkgs/blob/master/pkgs/development/interpreters/python/mk-python-derivation.nix buildPythonPackage implementation]
* [https://nixos.org/manual/nixpkgs/#python Python] in the nixpkgs manual
* [https://github.com/on-nix/python Python on Nix] is an "Extensive collection of Python projects from PyPI"
* [https://nixos.org/manual/nixpkgs/stable/#examples Rust section of Nixpkgs manual] - build Rust code in Python projects


== References ==
== References ==

Latest revision as of 09:15, 15 September 2024

See Language-specific package helpers for a list of tools to package python packages.

Prepare Packaging

When you want to package a new software from a local checkout with the inputs coming from nixpkgs (and not virtualenv+pip) you can use the following shell.nix [1]:

with import <nixpkgs> {};
with pkgs.python3Packages;

buildPythonPackage rec {
  name = "mypackage";
  src = ./path/to/source;
  propagatedBuildInputs = [ pytest numpy pkgs.libsndfile ];
}

You can now run nix-shell and it will drop you in a shell similar to the python setup.py develop mode which uses the local code in ./path/to/source as input. propagatedBuildInputs will contain the packages you need in your project. After you've finished developing you can replace the relative path with fetchFromGitHub { ... } or fetchPypi { ... }.

Pip and Virtualenv enabled nix-shell

It might be the case that you simply need to prototype fast small projects with pip and virtualenv without the need for relying on the dependencies being already packaged in nixpkgs. {{Notice|Keep in mind that the virtualenv symlinks will be invalidated if you update your system!||

For a local working python environment you can use the following shell.nix[2].

{ pkgs ? import <nixpkgs> { } }:

let
  pythonEnv = pkgs.python3.withPackages(ps: [ ]);

in
pkgs.mkShell {
  packages = [
    pythonEnv
  ];
}

When invoked with nix-shell, this environment gives you a readline-enabled Python, plus virtualenv and pip, from which you can create a virtual environment and then proceed to fill it with pip-installed packages from requirements.txt or any other source of packages.

And the only other thing you need to do is figure out which non-Python packages your pip-installable packages will need, and include them in buildInputs.

Caveats

ModuleNotFoundError: No module named 'pkg_resources'

If you see this runtime error

ModuleNotFoundError: No module named 'pkg_resources'

add setuptools to your derivation

buildPythonPackage {
  # ...
  propagatedBuildInputs = [
    # ...
    setuptools
  ];
}

Please report such issues at https://github.com/NixOS/nixpkgs/issues

HTTP 404 with fetchPypi

example error:

curl: (22) The requested URL returned error: 404
error: cannot download stt-1.2.0.tar.gz from any mirror

when we look at https://pypi.org/project/stt/#files we see only *.whl files:

  • stt-1.2.0-cp310-cp310-win_amd64.whl
  • stt-1.2.0-cp310-cp310-manylinux_2_24_x86_64.whl
  • stt-1.2.0-cp310-cp310-macosx_10_10_universal2.whl
  • ...

this means, this is a binary release, so we have two options:

  1. build from source
  2. install binary release

build from source

replace this

    buildPythonPackage {
      pname = "TODO";
      version = "TODO";
      src = fetchPypi {
        inherit pname version;
        sha256 = ""; # TODO
      };

with this

    buildPythonPackage {
      pname = "TODO";
      version = "TODO";
      src = fetchFromGitHub {
        owner = "TODO";
        repo = "TODO";
        rev = "v${version}";
        sha256 = ""; # TODO
      };


install binary release

replace this

    buildPythonPackage {
      pname = "TODO";
      version = "TODO";
      src = fetchPypi {
        inherit pname version;
        sha256 = ""; # TODO
      };

with this

    buildPythonPackage {
      pname = "TODO";
      version = "TODO";
      format = "wheel";
      src = fetchPypi rec {
        inherit pname version format;
        sha256 = ""; # TODO
        dist = python;
        python = "py3";
        #abi = "none";
        #platform = "any";
      };

... or use fetchurl to download the *.whl file directly.

reference: fetchPypi implementation

Fix Missing setup.py

The setup.py file is required for buildPythonPackage, but it's missing in some packages. If you get the following error, you need to one of the workarounds below.

FileNotFoundError: [Errno 2] No such file or directory: 'setup.py'

If the package has a pyproject.toml file, set

buildPythonPackage {
  format = "pyproject";
}

If both setup.py and pyproject.toml are missing, you have to add one of these files.

Note: sometimes you will be able to find pyproject.toml in the source for a package despite it not being present in a .whl file. You can inspect the contents of a .whl file by downloading it from PyPi and then extracting it with nix-shell -p python311Packages.wheel --command wheel unpack path/to/package.whl.

For example, you can create the setup.py in the preBuild phase.

buildPythonPackage {
  preBuild = ''
    cat > setup.py << EOF
from setuptools import setup

with open('requirements.txt') as f:
    install_requires = f.read().splitlines()

setup(
  name='someprogram',
  #packages=['someprogram'],
  version='0.1.0',
  #author='...',
  #description='...',
  install_requires=install_requires,
  scripts=[
    'someprogram.py',
  ],
  entry_points={
    # example: file some_module.py -> function main
    #'console_scripts': ['someprogram=some_module:main']
  },
)
    EOF
  '';
}

More info about the setup.py can be found here. (note: from python 3.12 onwards, distutils is deprecated see https://docs.python.org/3.11/distutils/index.html)

scripts is useful for self-contained python scripts with no local imports.

If a python script has local imports, for example from .some_module import some_function, either include all files in the scripts array, or add only the entry function to entry_points.

In this example, someprogram.py would be installed as $out/bin/someprogram.py.
To rename the binary, for example to remove the .py file extension, you can use postInstall

buildPythonPackage {
  # ...
  postInstall = ''
    mv -v $out/bin/someprogram.py $out/bin/someprogram
  '';
}

requirements.txt

requirements.txt in it's simplest form is a list of python packages

numpy
Requests
Pillow

buildPythonPackage will check these dependencies, but you still must declare the nix dependencies in buildInputs, propagatedBuildInputs, checkInputs, ...

Automatic packaging

TODO https://github.com/nix-community/poetry2nix - 400 stars

TODO https://github.com/nix-community/pip2nix - 100 stars

TODO https://github.com/nix-community/pypi2nix - 200 stars - archived

Testing via this command is deprecated

In most cases, tests will pass anyway and you can ignore the warning.

In some cases, tests will fail, for example:

running test
WARNING: Testing via this command is deprecated and will be removed in a future version. Users looking for a generic test entry point independent of test runner are encouraged to use tox.
[ ... ]
TypeError: some_function() missing 1 required positional argument: 'some_argument'

quick fix: run tests with python's unittest module

  checkPhase = ''
    runHook preCheck
    ${python3.interpreter} -m unittest
    runHook postCheck
  '';

See also

References